"The MCL algorithm is short for the Markov Cluster Algorithm, a fast and scalable unsupervised cluster algorithm for graphs (also known as networks) based on simulation of (stochastic) flow in graphs."

• 12.135 (Multithreaded version)

SGE script example :

#!/bin/bash 
 
#$ -V
 
#$ -N test_sge
 
#$ -pe openmp 8  ## for 8 threaeds 
 
#$ -o $JOB_NAME.$JOB_ID.out
 
 
module load  bio/mcl/12.135
 
mcl [params...]  -te $NSLOTS   ## $NSLOTS equal to requested threads i.e 8

submit to SGE

qsub mysqcript.sge

http://micans.org/mcl/