RAxML

RAxML is a fast implementation of maximum-likelihood (ML) phylogeny estimation that operates on both nucleotide and protein sequence alignments."

Installed version

  • 7.2.8 (MPI, OpenMP)

Using RAxML on Cluster

#!/bin/bash -l
 
#$ -N RAxML_test
#$ -V
#$ -o $JOB_NAME.$JOB_ID.out
#$ -q all.q
#$ -pe openmp 8
 
module load bio/raxml/7.2.8 
 
raxmlHPC-SSE3 -T $NSLOTS -m GTRCAT -n test -s brown.phylip
#!/bin/bash -l
#$ -q parallel.q
#$ -o $JOB_NAME.$JOB_ID.out
#$ -V
#$ -N job_raxml_mpi
#$ -pe mpi 32
 
 
module load bio/raxml/8.2.4
 
mpirun -np $NSLOTS raxmlHPC-MPI-SSE3 -m GTRCAT -n test -s brown.phylip

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