Ray

Ray is a parallel software that computes de novo genome assemblies with next-generation sequencing data.

Ray is written in C++ and can run in parallel on numerous interconnected computers using the message-passing interface (MPI) standard.

Installed version

This software is installed on lumière cluster: mesologin1.univ-fcomte.fr

  • 2.3.1

check the installed version 

module avail bio/ray
 
bio/ray/2.3.1

Usage

Here is a an exmaple of SGE script: 

#!/bin/bash -l
 
#$ -q parallel.q
#$ -V
#$ -N test_sge
#$ -pe mpi 16  ## on demande 16 coeurs 
#$ -o $JOB_NAME.$JOB_ID.out
 
 
module load bio/ray
 
mpirun -np $NSLOTS Ray -k 31 -p l1_1.fastq l1_2.fastq -p l2_1.fastq l2_2.fastq -o test
 

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